PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 524aa    MW: 59318.1 Da    PI: 7.2964
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459840.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.8e-17163212155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_016459840.1 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 212
                     78*******************......55************************997 PP

2AP242.61.5e-13255305155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+       g    +k+++lg f+t+ eAa+a+++a+ k +g
  XP_016459840.1 255 SKYRGVTLHK-CGRWEAR---M---GqllGKKYVYLGLFDTEVEAARAYDKAAIKCNG 305
                     89********.7******...5...334336**********99**********99776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.2E-9163212IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-15163221IPR016177DNA-binding domain
PROSITE profilePS5103217.596164220IPR001471AP2/ERF domain
SMARTSM003801.9E-31164226IPR001471AP2/ERF domain
CDDcd000184.56E-11164219No hitNo description
Gene3DG3DSA:3.30.730.104.9E-17164220IPR001471AP2/ERF domain
CDDcd000181.30E-25255315No hitNo description
PfamPF008473.6E-9255305IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-17255315IPR016177DNA-binding domain
PROSITE profilePS5103215.685256313IPR001471AP2/ERF domain
SMARTSM003801.7E-32256319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-16256313IPR001471AP2/ERF domain
PRINTSPR003676.3E-6257268IPR001471AP2/ERF domain
PRINTSPR003676.3E-6295315IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MWNLNDSPHN LRGDEPEEND DEKGKGVGSV SNSSSSAVDN NIEEYGSEEE EEEDNGQKGK  60
KKRTTNPSKI FGFCMVAPGN DDNLSSESEP PVTRQFFPVD ELEIGAASDF DDRSSRFPRA  120
QWAGVKFYPS ETSGNLPLGK GTELSQQVQP MKKSRRGPRS RSSQYRGVTF YRRTGRWESH  180
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVEADINFN LEDYEDDLKQ MKNLTKEEFV  240
HVLRRQSTGL PRGSSKYRGV TLHKCGRWEA RMGQLLGKKY VYLGLFDTEV EAARAYDKAA  300
IKCNGKDAVT NFDLSIYENE LNSAECTNYK AADHSLDLSL GGASSKQSSR EMEDNNNRDK  360
SSPMQFEADW RHHGLRPKHQ TSPIDVDARR RDGYKESETL QLLSKTHLHS PSSFKPNNNE  420
MQRFDQYMRA GESQMIQMTF PPHFNSSNYH IQFPSSSNGG RIGATNRREV SFSSSDSQQW  480
QSNNLPHPQQ LATAAASSGF PQQILRHQNW SHKNGYHYSL MRPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009804920.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2
RefseqXP_016459840.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotP479271e-119AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLK4B6T10.0K4B6T1_SOLLC; Uncharacterized protein
STRINGSolyc02g064960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20192365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-117AP2 family protein